Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNLSVAPKEIAGHGLLDGKVVVVTAAAGTGIGSATARRALAEGADVVIS-DHHERRLGETAAELSALGLGRVEHVVCDVTSTAQVDALIDSTTARMGRLDVLVNNAGLGGQTPVADMTDDEWDRVLDVSLTSVFRATRAALRYFRDAPHGGVIVNNASVLGWRAQHSQSHYAAAKAGVMALTRCSAIEAAEYGVRINAVSPSIARHKF---LDKTASAELLDRLAAGEAFGRAAEPWEVAATIAFLASDYSSYLTGEVISVSCQHP
2UVD Chain:A ((1-240))
--------------MLKGKVALVTGAS-RGIGRAIAIDLAKQGANVVVNYAGNEQKANEVVDEIKKLGSDAI-AVRADVANAEDVTNMVKQTVDVFGQVDILVNNAGVTKDNLLMRMKEEEWDTVINTNLKGVFLCTKAVSRFMMRQRHGR-IVNIASVVGVTGNPGQANYVAAKAGVIGLTKTSAKELASRNITVNAIAPGFIATDMTDVLDENIKAEMLKLIPAAQ-FG---EAQDIANAVTFFASDQSKYITGQTLNV-----
General information:
TITO was launched using:
RESULT:
Template:
2UVD.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -114962 for 2071 contacts (-55.5/contact) +
2D Compatibility (PS) -25355 + (NN) -3444 + (LL) 1396
1D Compatibility (HY) -18400 + (ID) 4500
Total energy: -165265.0 ( -79.80 by residue)
QMean score : 0.538
(partial model without unconserved sides chains):
PDB file :
Tito_2UVD.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2UVD-query.scw
PDB file :
Tito_Scwrl_2UVD.pdb
: