Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MVYTGSDAGDHASAPQPSGSGSVPASVNVPGLVVAAVWAVGLVAGLV-----ALTIGHLAVAAAALVVAVMAPWCRVAYIAHGQHRVCGETLRGTPAGETASFPTGWRGLRFSTR
2YIU Chain:A ((310-360))
----------------------------------ADVWVVMLVNWLSFGIIDAKFFGVIAMFGAILVMA-LVPWLDTSRVRSGQYR-----------------------------
General information:
TITO was launched using:
RESULT:
Template:
2YIU.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -20832 for 202 contacts (-103.1/contact) +
2D Compatibility (PS) -4710 + (NN) -2945 + (LL) 1772
1D Compatibility (HY) -4800 + (ID) 950
Total energy: -32465.0 ( -160.72 by residue)
QMean score : 0.015
(partial model without unconserved sides chains):
PDB file :
Tito_2YIU.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2YIU-query.scw
PDB file :
Tito_Scwrl_2YIU.pdb
: