Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MTARLRPELAG-LPVYVPGKTVPGAIKLASNETVFGPLPSVRAAIDRATDTV-------NRYPDNGCVQLKAALARHL----GPDFAPEHVAVGCGSVSLCQQLVQVTASVGDEVVFGWRSFELYPPQVRVAGAIPIQVPLTDHTFDLYAMLATVTDRTR---LIFVCNPNNPTSTVVGPDALARFVEAVPAHILIAIDEAYVEYIRDGMRPDSLGLVRAH-NNVVVLRTFSKAYGLAGLRIGYAIGHPDVITALDKVYVPFTVSSIGQAAAIASLDAADELLARTDTVVAERARVSAELRAAGFTLPPSQANFVWLPLGSRTQDFVEQAADARIVVRPYGTDG-VRVTVAAPEENDAFLRFARRWRSDQ |
| 4R8D Chain:A ((16-369)) | ----LRADLRGKAPYGAPQLAVP--VRLNTNEN---PHPPTRALVDDVVRSVREAAIDLHRYPDRDAVALRADLAGYLTAQTGIQLGVENIWAANGSNEILQQLLQAFGGPGRSAIGFVPSYSMHPIISDGTHTEWIEASRAND-FGLDVDVAVAAVVDRKPDVVFIASPNNPSGQSVSLPDLCKLLDVAPG--IAIVDEAYGEF---SSQPSAVSLVEEYPSKLVVTRTMSKAFAFAGGRLGYLIATPAVIDAMLLVRLPYHLSSVTQAAARAALRHSDDTLSSVAALIAERERVTTSLNDMGFRVIPSDANFVLFGEFADAPAAWRRYLEAGILIRDVGIPGYLRATTGLAEENDAFLRASARIATD- |
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General information:
TITO was launched using:
| RESULT:
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Template: 4R8D.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -215734 for 2828 contacts (-76.3/contact) +
2D Compatibility (PS) -37505 + (NN) -23042 + (LL) 1276
1D Compatibility (HY) -16800 + (ID) 5950
Total energy: -297755.0 ( -105.29 by residue)
QMean score : 0.597
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