Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MDNQRQYPRTPLKCRIRI--S--HP---LFGELMAQTRDLSDTGVYVKHPDLT--QLPTGSVVT-GQVQDLPIDAPILQMEVVRVDA------EGVGLRFLSEA
3KYF Chain:A ((113-213))
-HQRRNAFRAALKLSQLVDIILDGAHLKGNGAMRGKLLDISATGCKLRFEGNVEDRLQLGQVYERFKAG-NPLGLVDTMVELRHLHYEERINTTFAGVRFHNLS
General information:
TITO was launched using:
RESULT:
Template:
3KYF.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -29135 for 500 contacts (-58.3/contact) +
2D Compatibility (PS) -8818 + (NN) -1338 + (LL) 132
1D Compatibility (HY) -800 + (ID) 850
Total energy: -40809.0 ( -81.62 by residue)
QMean score : 0.418
(partial model without unconserved sides chains):
PDB file :
Tito_3KYF.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3KYF-query.scw
PDB file :
Tito_Scwrl_3KYF.pdb
: