Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSRLQTRFAQLKQENRAALVTFVTAGDPDYASSLEILKGL-PAAGADVIELGMPFTDPMADGPAIQLANIRALDGGQTLARTLQMVREFRSGDSETPLVLMGYFNPIHHYGVERFIAEAKEVGVDGLIVVDLPPEHNEDLCHPAQAAGIDFIRLTTPTTGDQRLPTVLEGSSGFVYYVSVAGVTGANAATLEHVEEAVARLRRHTDLPIGIGFGIRSAEHAAAVARL-ADGVVVGSALIDRIA-KARDNAQAVKDVLALCGELAEGVRNAR
1GEQ Chain:A ((6-239))
-----------------SLIPYLTAGDPDKQSTLNFLLALDEYAGA--IELGIPFSDPIADGKTIQESHYRALKNGFKLREAFWIVKEFRR-HSSTPIVLMTYYNPIYRAGVRNFLAEAKASGVDGILVVDLPVFHAKEFTEIAREEGIKTVFLAAPNTPDERLKVIDDMTTGFVYLVSLY-------EIPKTAYDLLRRAKRICRNKVAVGFGVSKREHVVSLLKEGANGVVVGSALVKIIGEKGREATEFLKKKVEELLGI--------
General information:
TITO was launched using:
RESULT:
Template:
1GEQ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -166144 for 1869 contacts (-88.9/contact) +
2D Compatibility (PS) -25705 + (NN) -19569 + (LL) 2404
1D Compatibility (HY) -20000 + (ID) 4900
Total energy: -233914.0 ( -125.15 by residue)
QMean score : 0.568
(partial model without unconserved sides chains):
PDB file :
Tito_1GEQ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1GEQ-query.scw
PDB file :
Tito_Scwrl_1GEQ.pdb
: