Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKATYSMLSQVTFPLAEAGYYVVPVALADETFRQNGLTSAGDVHQVSPAKLREIYGADAALYVTVSDYGTRYM---VISSATIVTASAKLVDLRSGTTLWTGSATASSEEGNGGNNGGLVGMLITAAVKQIINSSVEDAGYPIAGMTSARLLSAGQPGGLLYGPRSPRYGSD
4MHJ Chain:H ((61-140))
----------------------------NQKFKVRATLTVGRSSSTAYMDLRSLTSEDSAVYYCVRNYG-SYGYFDVWGAGTTVTVSSAKTTPPSVYPLAPGSAAQTNSMVTLGCLVKGYFPEPVTVTWNSGSLSSGVHTFPAVLQSDLYTLSSSVTVPSSTWPSETVTCNV
General information:
TITO was launched using:
RESULT:
Template:
4MHJ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -4521 for 287 contacts (-15.8/contact) +
2D Compatibility (PS) -7968 + (NN) -895 + (LL) 2776
1D Compatibility (HY) -1200 + (ID) 1050
Total energy: -12858.0 ( -44.80 by residue)
QMean score : -0.127
(partial model without unconserved sides chains):
PDB file :
Tito_4MHJ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4MHJ-query.scw
PDB file :
Tito_Scwrl_4MHJ.pdb
: