Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MDRKTLDDTSKFLSYVLRHQPEAIGLTLDGEGWADIDALIAGAARDGRALDRMLLGAVVENNDKKRFALSADGQRIRAVQGHSHAAVAIAYAPAVPPAVLYHGTASRFLDSIRERGLVPGSRHHVHLSARRATALEVGRRYGSPVLLEIDARDMHLAGHLFHQAENGVWLTERVPVRFIREA
3DP9 Chain:A ((66-138))
------------------------------------------------------------------------------------------YAPDV---VINTGSAGGFDASLNVGDVVISSEVRHHDADVTAFGYEIGQMAGQPAAFKADEKLMTVAEQALAQLPNTHAVRGLICTGDAFVC
General information:
TITO was launched using:
RESULT:
Template:
3DP9.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -7519 for 323 contacts (-23.3/contact) +
2D Compatibility (PS) -7444 + (NN) -1278 + (LL) 6160
1D Compatibility (HY) -2000 + (ID) 1100
Total energy: -13181.0 ( -40.81 by residue)
QMean score : -0.048
(partial model without unconserved sides chains):
PDB file :
Tito_3DP9.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3DP9-query.scw
PDB file :
Tito_Scwrl_3DP9.pdb
: