Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKTIGLGIATLLFSATALAAPKPCEELKAEIETKIQSAGVTSYTLEIVRNDEVSDPNMVVGSCENGTKKIIYQKNDD
2VDC Chain:A ((432-478))
---------------TASLKGEPSDMDKAELRRRQQAFGLTMEDMELILHPMVEDGKEAIGSMGDDSPIAVLSDKYR
General information:
TITO was launched using:
RESULT:
Template:
2VDC.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -335 for 202 contacts (-1.7/contact) +
2D Compatibility (PS) -4890 + (NN) -905 + (LL) 1360
1D Compatibility (HY) 0 + (ID) 700
Total energy: -5470.0 ( -27.08 by residue)
QMean score : 0.365
(partial model without unconserved sides chains):
PDB file :
Tito_2VDC.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2VDC-query.scw
PDB file :
Tito_Scwrl_2VDC.pdb
: