Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MAVDMFIKIGDVKGESKDKTHAEEIDVLAWSWGMSQSGSMHMGGGGGAGKVNVQDLSFTKYIDKSTPNLMMACSSGKHYPQAKLTIRKAGGENQVEYLIITLKEVLVSSVSTGGSGGEDRLTENVTLNFAQVQVDYQPQKADGAKDGGPVKYGWNIRQNVQA
1UGH Chain:I ((42-84))
-------------------------------------------------------LVHTAYDESTDENVMLLTSDAPEYKPWALVIQDSNGENKIKML----------------------------------------------------------------
General information:
TITO was launched using:
RESULT:
Template:
1UGH.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -10365 for 212 contacts (-48.9/contact) +
2D Compatibility (PS) -4603 + (NN) -647 + (LL) 5704
1D Compatibility (HY) -3200 + (ID) 650
Total energy: -13761.0 ( -64.91 by residue)
QMean score : 0.196
(partial model without unconserved sides chains):
PDB file :
Tito_1UGH.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1UGH-query.scw
PDB file :
Tito_Scwrl_1UGH.pdb
: