Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MAELTLQERLQPSLLDRLTDDEPGNLKEAAERRVLTLNQLKASVLRDLAWLFNTTSLFDH---GPAARMPAGNSVLNYGLPALAGHTASSVD-VHAIEALLTETIATFEPRIIRSSLRVRAQLLPGEMDHNALSFEIEGDLWAEPAPLRLLLTTNLDLETGHVRVAQGERRRT
4EDK Chain:A ((197-280))
----------------------------------------------------NITLMFDGDFAGSEATLKTGQHLLQQGLNVFVIQLPSGMDPDEYIGKYGNDAFTTFVKNDKKSFAHYKVSILKDEIAHNDLSYERYLKELSHDISLMKSSILQQKAINDVAPFFNVSPEQL
General information:
TITO was launched using:
RESULT:
Template:
4EDK.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -7917 for 479 contacts (-16.5/contact) +
2D Compatibility (PS) -8127 + (NN) 2821 + (LL) 4580
1D Compatibility (HY) -4800 + (ID) 1150
Total energy: -14593.0 ( -30.47 by residue)
QMean score : 0.045
(partial model without unconserved sides chains):
PDB file :
Tito_4EDK.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4EDK-query.scw
PDB file :
Tito_Scwrl_4EDK.pdb
: