Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSDAKVDTRRLVGRLLLVTVLMFAFGFALVPLYDVMCRALGINGKTAGSAYSGEQQVDVGREVKVQFMTSNNIDMVWEFRSAGDQLVVHPGAVNQMVFYARNPS--DKPMTAQAIPSIAPAEAAAYFHKTECFCFTQQVLQPGESIEMPVRFIVDRDLPKDVRHVTLAYTLFDITARKPPVPVAGR
3PFO Chain:A ((294-423))
---------------------------------ELDCRLGLLTGDTPQEAMRGIEKCLADAQATDSFLSENPAELVWSGFQA-DPAVCEPGGVAEDVLTAAHKAAFNAPLDARLSTAVNDTRYYSVDYGIPALCY-------GPYGQGPHAFDERIDL-ESLRKTTLSIALFVAEWCGLRKL----
General information:
TITO was launched using:
RESULT:
Template:
3PFO.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -17298 for 683 contacts (-25.3/contact) +
2D Compatibility (PS) -13264 + (NN) 1069 + (LL) 3984
1D Compatibility (HY) -3600 + (ID) 1550
Total energy: -30659.0 ( -44.89 by residue)
QMean score : -0.093
(partial model without unconserved sides chains):
PDB file :
Tito_3PFO.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3PFO-query.scw
PDB file :
Tito_Scwrl_3PFO.pdb
: