Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSLDWTCKHHADLTLKELYALLQLRTEVFVVEQKC-PYQ--EVDGLDLVGDTHHLMAWRDGQLLAYLRLLDPVR-------------HEGQVVIGRVVSSSAARGQGLGHQLMERALQAAERL-WLDTPVYLSAQAHLQAYYGRYGFVAVTEV-YLEDDIPHIGMRRA
1CJW Chain:A ((7-164))
--------EFRCLTPEDAAGVFEIEREAFISVSGNCPLNLDEVQHFLTLCPELSLGWFVEGRLVAFIIGSLWDEERLTQESLALHRPRGHSAHLHALAVHRSFRQQGKGSVLLWRYLHHVGAQPAV-RRAVLMCEDALVPFYQRFGFHPAGPCAIVVGSLTFTEMHCS
General information:
TITO was launched using:
RESULT:
Template:
1CJW.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -80810 for 1035 contacts (-78.1/contact) +
2D Compatibility (PS) -14621 + (NN) 1097 + (LL) 532
1D Compatibility (HY) -5200 + (ID) 1250
Total energy: -100252.0 ( -96.86 by residue)
QMean score : 0.438
(partial model without unconserved sides chains):
PDB file :
Tito_1CJW.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1CJW-query.scw
PDB file :
Tito_Scwrl_1CJW.pdb
: