Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSKQIEFFFDFGSPTTYLAWTQLPRIAAAHGASIAWRPMLLGGVFKATGNHSPIEVPAKGRYTLHDLARYAKRYGVPLAFNPAF-----PINTLTLMR--GAQGYLGGEGFQPYLKAVFEALWVRQQNLGKPEVVAQVLAEAGFDPDE---FLRLVGDEQVKEGLKATTEEAVRRGVFGAPSFFVG----DQLFFGQDRLDFVAEVLAG
1YZX Chain:A ((4-210))
LPRTVELFYDVLSPYSWLGFEILCRYQNIWNINLQLRPSLITGIMKDSGNKPPGLLPRKGLYMANDLKLLRHHLQIPIHFPKDFLSVMLEKGSLSAMRFLTAVNLEHPEMLEKASRELWMRVWSRNEDITEPQSILAAAEKAGMSAEQAQGLLEKIATPKVKNQLKETTEAACRYGAFGLPITVAHVDGQTHMLFGSDRMELLAHLLGE
General information:
TITO was launched using:
RESULT:
Template:
1YZX.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -125410 for 1500 contacts (-83.6/contact) +
2D Compatibility (PS) -20629 + (NN) -6509 + (LL) 0
1D Compatibility (HY) -14800 + (ID) 2750
Total energy: -170098.0 ( -113.40 by residue)
QMean score : 0.552
(partial model without unconserved sides chains):
PDB file :
Tito_1YZX.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1YZX-query.scw
PDB file :
Tito_Scwrl_1YZX.pdb
: