Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNRVLYPGTFDPITKGHGDLIERASRLFDHVIIAVAASPKKNPLFSLEQRVALAQEVTKHLPNVEVVGFSTLLAHFVKEQKANVFLRGLRAVSDFEYEFQLANMNRQLAPDVESMFLTPSEKYSFISSTLVREIAALGGDISKFVHPAVADALAERFKR
3K9W Chain:A ((26-177))
----VYPGTFDPLTRGHEDLVRRASSIFDTLVVGVADSRAKKPFFSLEERLKIANEVLGHYPNVKVMGFTGLLKDFVRANDARVIVRGLRAVSDFEYEFQMAGMNRYLLPDVETMFMTPSDQYQFISGTIVREIAQLGGDVSKFVFPSVEKWLTEKVAA
General information:
TITO was launched using:
RESULT:
Template:
3K9W.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -112378 for 1165 contacts (-96.5/contact) +
2D Compatibility (PS) -16633 + (NN) -8579 + (LL) 420
1D Compatibility (HY) -21600 + (ID) 4650
Total energy: -163420.0 ( -140.27 by residue)
QMean score : 0.553
(partial model without unconserved sides chains):
PDB file :
Tito_3K9W.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3K9W-query.scw
PDB file :
Tito_Scwrl_3K9W.pdb
: