Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MVASKEPIMSQSERRFSFEFFPAKTEAGHEKLLATARNLAGYKPDFFSCTYGAGGSTRDRTLSTVLQLDGEVKVPTAPHLSCVGDSKAELRELLGRYREAGIRRIVALRGDLPSGMGMASGELRYANELVDFIRTETGDHFHIEVAAYPEVHPQARSFEDDLANFVRKVKAGASSAITQYFFNADAYFYFVERVAKLGVDIPVVPGIMPITNYSKLARFSDACGAELPRWIRKQLEAYGDDSRSIQAFGEQVISEMCERLLEGGAPGLHFYTLNQADPSLAIWKNLQLPR
1ZPT Chain:A ((20-290))
----------QGQINVSFEFFPPRTSEMEQTLWNSIDRLSSLKPKFVSVTY---------THSIIKGIKDRTGLEAAPHLTCIDATPDELRTIARDYWNNGIRHIVALRG-------------MYASDLVTLLK-EVAD-FDISVAAYPEVHPEAKSAQADLLNLKRKVDAGANRAITQFFFDVESYLRFRDRCVSAGIDVEIIPGILPVSNFKQAKKFADMTNVRIPAWMAQMFDGLDDDAETRKLVGANIAMDMVKILSREGVKDFHFYTLNRAEMSYAICHTLGVRP
General information:
TITO was launched using:
RESULT:
Template:
1ZPT.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -174021 for 2039 contacts (-85.3/contact) +
2D Compatibility (PS) -27578 + (NN) -14280 + (LL) 1028
1D Compatibility (HY) -23600 + (ID) 5050
Total energy: -243501.0 ( -119.42 by residue)
QMean score : 0.641
(partial model without unconserved sides chains):
PDB file :
Tito_1ZPT.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1ZPT-query.scw
PDB file :
Tito_Scwrl_1ZPT.pdb
: