Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MGNLSFLATSDGASLAYRLDGAAEKPLLALSNSIGTTLHMWDAQLPALTRHFRVLRYDARGHGASSVPPGPYTLARLGEDVLELLDALEVRRAHFL-GLSLGGIVGQWLALHAPQRIERLVLANTSAWL-GPAAQWDERIAAVLQAEDMSETAAGFLGNWFPPALLE----RAEP-VVERFRAMLMATNRHGL-AGSFAAVRDTDLRAQLARIERPTLVIAGAYDTVTAASHGELIAASIAGARLVTLP-AVHLSNVEFPQAFEGAVLSFLGAA |
| 4UHC Chain:A ((6-268)) | --KITTTATPGEIELAFEDTGTGLPVLLVHGFPLDRT--MWKAQREELCDEFRVIVPDLRGFGESQVIPGVATMEAMADDLAGLCNHLGLTGKIVLGGLSMGGYVAFAFARKYRDRLAGLILCDTRARPDSPEAKEN----RRRVAERVRREGPGFIAEEMIPRLCCESTFRNHPEVIEKIRQMILSAPPEGVAAAALGMAERPDSTDLLPALSCPTLVLVGQFDAISPPEEMEAMARTIPQSQFVVIPDAGHLPPMEQPERVTQAIREWLRKV |
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General information:
TITO was launched using:
| RESULT:
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Template: 4UHC.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -161108 for 2270 contacts (-71.0/contact) +
2D Compatibility (PS) -26689 + (NN) -4931 + (LL) 808
1D Compatibility (HY) -16400 + (ID) 3850
Total energy: -212170.0 ( -93.47 by residue)
QMean score : 0.442
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