Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MDTLAPESTRQNLR-SQRLNLLTNEPHQRLESLVKSKEPFASRDNFARFVAAQYLFQHDLEPLYRNEALARLFPGLASRARDDAARADLADLGHPVPEGDQSV-READLSLAEALGWLFVSEGSKLGAAFLFKKAAALELDENFGARHLAEPEGGRAQGWKSFVAILDGIELNEEEERLAAKGASDAFNRFGDLLERTFA
1P3V Chain:A ((8-192))
-----------ALTFAKRLKADTTAVHDSVDNLVMSVQPFVSKENYIKFLKLQSVFHKAVDHIYKDAELNKAIPELEYMARYDAVTQDLKDLGEEPYKFDKELPYEAG---NKAIGWLYCAEGSNLGAAFLFKHAQKLDYNGEHGARHLAPHPDGRGKHWRAFVEHLNALNLTPEAEAEAIQGAREAFAFYKVVLRETFG
General information:
TITO was launched using:
RESULT:
Template:
1P3V.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -37793 for 1405 contacts (-26.9/contact) +
2D Compatibility (PS) -20316 + (NN) -16206 + (LL) 1036
1D Compatibility (HY) -14000 + (ID) 3550
Total energy: -90829.0 ( -64.65 by residue)
QMean score : 0.450
(partial model without unconserved sides chains):
PDB file :
Tito_1P3V.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1P3V-query.scw
PDB file :
Tito_Scwrl_1P3V.pdb
: