Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MSGYAERATTRRRQAGFTLIEVMVAIMLMAIVSLMAWRGLDSIARASAHLEDSTEQGAALLRALNQLERDIALHSAIREETGLPSGDEPIRAGDSLPPGLALKRLSEIPLRLDIVRASTEPGAPLQRVRWWRQGKVLYRAASPSGDRLPLPPLAERVA----VLDDVS--RFDIRAWVPGKGWTRLPARSKVRASGLEISLARVTRNGVERYRRVVALQ |
| 4C11 Chain:B ((399-438)) | -----------------------------------------------------------------------------------------------------------------------------------------------SGDDCVVKPIDDRFANALLALNDMGKVRKDIPQWQPSKGWHDWQQVPFCSHHFHELIMKDGRKLVVPCRPQDELIG |
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General information:
TITO was launched using:
| RESULT:
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Template: 4C11.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) 372 for 112 contacts (3.3/contact) +
2D Compatibility (PS) -3360 + (NN) 63 + (LL) 11220
1D Compatibility (HY) -2400 + (ID) 800
Total energy: 5095.0 ( 45.49 by residue)
QMean score : 0.108
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