Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MRLPAVTPGWPAIPPGATLGGFDGQ--GRRSWATISRAPSGASCSRNRSATRTYGWGATATTPATITGIPSTTAPAT
3VXJ Chain:A ((185-212))
-----VFPGQAVVPPGIILTGRDGDTGTRPSWALDGSFMAFRHFQQKVPEFNAYTLANAIPANSAGNLTQQEGAEFL
General information:
TITO was launched using:
RESULT:
Template:
3VXJ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) 3005 for 97 contacts (31.0/contact) +
2D Compatibility (PS) -3024 + (NN) -3226 + (LL) 488
1D Compatibility (HY) -800 + (ID) 700
Total energy: -4257.0 ( -43.89 by residue)
QMean score : 0.243
(partial model without unconserved sides chains):
PDB file :
Tito_3VXJ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3VXJ-query.scw
PDB file :
Tito_Scwrl_3VXJ.pdb
: