Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MRAVVELLAGARRLVIFTGAGVSAESGIPTFRDALGGLWARYDPAALATPAAFADDPALVWGWYEWRRLKVLGVQPNPAHRAIAALSGRIANTRLVTQNVDDLHERAGSRDVLHLHGSLHAPRCATCAAAYRDALPDSVEPEEGRRIEP-PRCPACGGQVRPGVVWFGEALPEAALREAFAAACECDLLLSVGTSGVVQPAARIPGLALEHGASVVHVNPQPVRTRHPREHCLVGPAGEVLPELLRRAFPG
1M2J Chain:A ((5-238))
---LLKTIAESKYLVALTGAGVSAESGIPTFRGK-DGLWNRYRPEELANPQAFAKDPEKVWKWYAWRMEKVFNAQPNKANQAFAELERLGVLKCLITQNVDDLHERAGSRNVIHLHGSLRVVRCTSCN--------NSFEVESAPKIPPLPKCDKCGSLLRPGVVWFGEMLPPDVLDRAMREVERADVIIVAGTSAVVQPAASLPLIVKQRGGAIIEINPDETPLTPIADYSLRGKAGEVMDELVRHVRKA
General information:
TITO was launched using:
RESULT:
Template:
1M2J.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -121276 for 1962 contacts (-61.8/contact) +
2D Compatibility (PS) -25157 + (NN) -13358 + (LL) 1212
1D Compatibility (HY) -18800 + (ID) 5850
Total energy: -183229.0 ( -93.39 by residue)
QMean score : 0.531
(partial model without unconserved sides chains):
PDB file :
Tito_1M2J.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1M2J-query.scw
PDB file :
Tito_Scwrl_1M2J.pdb
: