Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTAESPTIR-LERYSERHVEGLTALYNDPAVARQVLQMPYQSVEQ----RRKRLHDSADDDRLLILVALHQGDVIGSASLEQHPRIRRSHSGSIGMGVAVAWQGKGVGSRLLGELLDIADNWMNLRRVELTVYTDNAPALALYRKFGFETEGEMRDYAVRDGRFVDVYSMARLRRVEGRVGE
4JJX Chain:A ((9-168))
------TLRALERGDLRFIHNLN---NNRNIMSYWFEEPYESFDELEELYNKHIHDNAER-RFVVEDA--QKNLIGLVELIEINYIHRS--AEFQIIIAPEHQGKGFARTLINRALDYSFTILNLHKIYLHVAVENPKAVHLYEECGFVEEGHLVEEFFINGRYQDVKRMYILQSKYLNR--
General information:
TITO was launched using:
RESULT:
Template:
4JJX.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -40890 for 1041 contacts (-39.3/contact) +
2D Compatibility (PS) -16020 + (NN) -3338 + (LL) 1204
1D Compatibility (HY) -12400 + (ID) 2500
Total energy: -73944.0 ( -71.03 by residue)
QMean score : 0.429
(partial model without unconserved sides chains):
PDB file :
Tito_4JJX.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4JJX-query.scw
PDB file :
Tito_Scwrl_4JJX.pdb
: