Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MALVDGFLELERSSGKLEWSAILQKMASDLGFSKILFGLLPKDSQDYENAFIVGNYPAAWREHYDRAGYARVDPTVSHCTQSVLPIFWEPSIYQTRKQHEFFEEASAAGLVYGLTMPLHGARGELGALSLSVEAENRAEANRFMESVLPTLWMLKDYALQSGAGLAFEHPVSKPVVLTSREKEVLQWCAIGKTSWEISVICNCSEANVNFHMGNIRRKFGVTSRRVAAIMAVNLGLITL
4NG2 Chain:A ((16-181))
-ALVDGFLELERSSGKLEWSAILQKMASDLGFSKILFGLLPKDSQDYENAFIVGNYPAAWREHYDRAGYARVDPTVSHCTQSVLPIFWEPSIYQTRKQHEFFEEASAAGLVYGLTMPLHGARGELGALSLSVEAENRAEANRFMESVLPTLWMLKDYALQSGAGLAF------------------------------------------------------------------------
General information:
TITO was launched using:
RESULT:
Template:
4NG2.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -102025 for 1276 contacts (-80.0/contact) +
2D Compatibility (PS) -17618 + (NN) -4892 + (LL) 6076
1D Compatibility (HY) -23600 + (ID) 8300
Total energy: -150359.0 ( -117.84 by residue)
QMean score : 0.601
(partial model without unconserved sides chains):
PDB file :
Tito_4NG2.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4NG2-query.scw
PDB file :
Tito_Scwrl_4NG2.pdb
: