Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MRKIFLACPYSHADAEVVEQRFRACNEVAATIVR--AGHVVFSQVSMSHPINLCLAELDRAAIGRLWAPVDAFYMDHLEELIVLDLPGWRDSAGIRREMEFFEAGGQRVSLWSEVEHEFR
3EHD Chain:A ((4-108))
MTKIYFAGPLFSQADLR------YNAYLVEQIRQLDKTIDLYLPQENAAIN-----DKSAYADSKMIALADTENVLASDLLVA-LLDGPTIDAGVASEIGVAYAKGIPVVALYTDSRQQG
General information:
TITO was launched using:
RESULT:
Template:
3EHD.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -55050 for 641 contacts (-85.9/contact) +
2D Compatibility (PS) -11129 + (NN) -2193 + (LL) 1396
1D Compatibility (HY) -400 + (ID) 900
Total energy: -68276.0 ( -106.51 by residue)
QMean score : 0.479
(partial model without unconserved sides chains):
PDB file :
Tito_3EHD.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3EHD-query.scw
PDB file :
Tito_Scwrl_3EHD.pdb
: