Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MQQVAKRAMTDTPDDRTGEASGLSKRQAFHRQHRQRAEEEARRLLDARAEQGGRWLDWVAGQLYLLRP---PEYAAMVRRELQRLSGD
2YTU Chain:A ((47-80))
----------------------------------------------------RQWLEWAIKE-YSLMEIDTSFFQNMDGKELCKMNKE
General information:
TITO was launched using:
RESULT:
Template:
2YTU.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -7681 for 118 contacts (-65.1/contact) +
2D Compatibility (PS) -3398 + (NN) -687 + (LL) 4092
1D Compatibility (HY) -2400 + (ID) 400
Total energy: -10474.0 ( -88.76 by residue)
QMean score : 0.227
(partial model without unconserved sides chains):
PDB file :
Tito_2YTU.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2YTU-query.scw
PDB file :
Tito_Scwrl_2YTU.pdb
: