Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNQTNLDDTLDVLNDLLQTSKDGEAGFHACAEDLRDP---QLKAAMLEQSRDCAAAADELERIVLELGGKPKDSTSFAGDLHRRWVDLKSLVTGKDEEAVLNECERGEDVAKHRYQAALEKS--LPAEIHQVIERQYQGVLRHHDRVRALRDARA
2VZB Chain:A ((13-159))
---LDVKSLIDQLNAALSEEWLAYYQYWVGALVVEGAMRADVQGEFEEHAEEERHHAQLIADRIIELEGVPVLDPKK--WFELARCKYDS-PTAFDSVSLLNQNVSSERCAILRYQEIANFTNGKDYTTCDIAKHILAEEEEHEQDLQDYLTDIA
General information:
TITO was launched using:
RESULT:
Template:
2VZB.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -2542 for 1131 contacts (-2.2/contact) +
2D Compatibility (PS) -16000 + (NN) -12014 + (LL) 396
1D Compatibility (HY) -2800 + (ID) 1100
Total energy: -34060.0 ( -30.11 by residue)
QMean score : 0.523
(partial model without unconserved sides chains):
PDB file :
Tito_2VZB.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2VZB-query.scw
PDB file :
Tito_Scwrl_2VZB.pdb
: