Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTSVFDRDDIQFQVVVNHEEQYSIWPEYKEIPQGWRAAGKSGLKKDCLAYIEEVWTDMRPLSLRQHMDKAAG
4GR4 Chain:A ((4-75))
MSNPFEEYDGGHVVLTDALGRHSLWPAGIAVPAGWSVRHGTDSREGCLAHIEHHWTDLRP------------
General information:
TITO was launched using:
RESULT:
Template:
4GR4.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -16059 for 352 contacts (-45.6/contact) +
2D Compatibility (PS) -6449 + (NN) -3513 + (LL) 900
1D Compatibility (HY) -1600 + (ID) 1000
Total energy: -27721.0 ( -78.75 by residue)
QMean score : 0.333
(partial model without unconserved sides chains):
PDB file :
Tito_4GR4.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4GR4-query.scw
PDB file :
Tito_Scwrl_4GR4.pdb
: