Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNPLIKTILSTNAGAGLAILRIVTGLTLMSHGSQKLFGMFGGAGLNGMAQWFESIGLTPGYLLATLAGSAEFFGGLALVIGLLVRPASVVVGFTMIVAIFSVHIGNGFFITDNGYEYALTLLMISVALLIDGAGKFSLDGKLSR
3RKO Chain:K ((64-86))
--------------------------------------------------------------LAISLAAAEASIGLALLLQLHRR-----------------------------------------------------------
General information:
TITO was launched using:
RESULT:
Template:
3RKO.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -5169 for 83 contacts (-62.3/contact) +
2D Compatibility (PS) -2282 + (NN) -576 + (LL) 7768
1D Compatibility (HY) -400 + (ID) 500
Total energy: -1159.0 ( -13.96 by residue)
QMean score : -0.138
(partial model without unconserved sides chains):
PDB file :
Tito_3RKO.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3RKO-query.scw
PDB file :
Tito_Scwrl_3RKO.pdb
: