Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MLKRLLIAACTLLFAGSLLAATPAAKPHVLIATSLGEIEVELDPAKAPISVKNFLEYVDSGYYDGTLFHRVIPGFMVQTGGFSAGMQEKKTRAPIKNEADNGLLNERGTLAMARTGVVDSATSQFFINLTDNDFLNHGA---RDFGYAVFGKVVRGMGVVDQIAKVPTTRRNGFADVPSDDVVILSAKRL
3S6M Chain:A ((6-164))
----------------------------VELHTNHGVIKLELDEAKAPKTVENFLNYVKKGHYDGTIFHRVINGFMIQGGGFEPGLKQKPTDAPIANEANNGLKNDTYTIAMARTNDPHSATAQFFINVNDNEFLNHSSPTPQGWGYAVFGKVVEGQDIVDKIKAVKTGS---HQDVPNDDVVIEKA---
General information:
TITO was launched using:
RESULT:
Template:
3S6M.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -85513 for 1235 contacts (-69.2/contact) +
2D Compatibility (PS) -15862 + (NN) -1746 + (LL) 2924
1D Compatibility (HY) -13600 + (ID) 4550
Total energy: -118347.0 ( -95.83 by residue)
QMean score : 0.600
(partial model without unconserved sides chains):
PDB file :
Tito_3S6M.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3S6M-query.scw
PDB file :
Tito_Scwrl_3S6M.pdb
: