Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSNLYTERVLSVHHWNDTLFSFKTTRNPGLRFKTGQFVMIGLEVDGRPLMRAYSIASPNYEEHLEFFSIKVPDGPLTSRLQHLKEGDELMVSRKPTGTLVHDDLLPGKHLYLLSTGTGMAPFLSVIQDPETYERYEKVILVHGVRWVSELAYADFITKVLPEHEYFGDQVKEKLIYYPLVTREPFRNQGRQTDLMRSGKLFEDIGLPPMNPQDDRAMICGSPSMLEETSAVLDSFGLKISPRMGEPGDYLIERAFVEK
4F7D Chain:A ((17-270))
-SKFDTATVLSVHHWTDTLFSFTCTRDQALRFNNGEFTMVGLEVDGKPLTRAYSIVSPNYEEHLEFFSIKVQNGPLTSRLQHLKVGDPVLIGKKPTGTLVADNLLPGKTLWMLSTGTGLAPFMSIIRDPDIYERFDKVVLTHTCRLKGELAYMDYIKHDLPGHEYLGDVIREKLVYYPTVT--------RITDLIASGKLFTDLDMPPFSPEQDRVMLCGSTAMLKDTTELLKKAGL-VEGKNSAPGHYVIERAFV--
General information:
TITO was launched using:
RESULT:
Template:
4F7D.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -159207 for 2028 contacts (-78.5/contact) +
2D Compatibility (PS) -26711 + (NN) -11596 + (LL) 604
1D Compatibility (HY) -30000 + (ID) 7700
Total energy: -234610.0 ( -115.69 by residue)
QMean score : 0.592
(partial model without unconserved sides chains):
PDB file :
Tito_4F7D.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4F7D-query.scw
PDB file :
Tito_Scwrl_4F7D.pdb
: