Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNPVLPEQAQEALDAFGHTASWEQRARLLLQWGERLAPLAEHERQEEHRVHGCESLVWLLGEQRD-GHWRFRADSDARLIRGLLAVLLARVDGIETRELARLDLNDWFTCLGLSRQLSPSRSNGLNAVLQRMRELAGQTAG
3G0M Chain:A ((6-140))
----ALPDKEKLLRNFTRCANWEEKYLYIIELGQRLAELNPQDRNPQNTIHGCQSQVWIVMRRNANGIIELQGDSDAAIVKGLMAVVFILYHQMTAQDIVHFDVRPWFEKMALAQHLTPSRSQGLEAMIRAIRAKAATL--
General information:
TITO was launched using:
RESULT:
Template:
3G0M.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -89850 for 1000 contacts (-89.8/contact) +
2D Compatibility (PS) -14415 + (NN) -7954 + (LL) 152
1D Compatibility (HY) -13600 + (ID) 2000
Total energy: -127667.0 ( -127.67 by residue)
QMean score : 0.721
(partial model without unconserved sides chains):
PDB file :
Tito_3G0M.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3G0M-query.scw
PDB file :
Tito_Scwrl_3G0M.pdb
: