Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNPLYRAAIHQLFLALDLPTPNDEESVLSLQVGPHLCHLAEHPTDHLLMFT--RLEGQGDA-TANEQNLFSQDPCKPILGRDPESGERLLWNRQPLQLLDRAQIHHQLEQLVAAAEELR
1K6Z Chain:A ((9-131))
----FEQAITQLFQQLSLSIPDTIEPVIGVKVGEFACHITEHPVGQILMFTLPSLDNNDEKETLLSHNIFSQDILKPILSWDEVGGHPVLWNRQPLNSLDNNSLYTQLEMLVQGAERLQ
General information:
TITO was launched using:
RESULT:
Template:
1K6Z.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -59259 for 714 contacts (-83.0/contact) +
2D Compatibility (PS) -12486 + (NN) -10344 + (LL) 164
1D Compatibility (HY) -11600 + (ID) 2550
Total energy: -96075.0 ( -134.56 by residue)
QMean score : 0.434
(partial model without unconserved sides chains):
PDB file :
Tito_1K6Z.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1K6Z-query.scw
PDB file :
Tito_Scwrl_1K6Z.pdb
: