Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNGVSRLLSLALLGAALHWAPAQAEEQPRLFELLGQPGYKATWHA---------------MFKGESDVPKWVSDASGPSSPSTSLSLEGQPYVLANSCKPHDCGNNRLLVAFRGDKSAAYGLQVSLPDEPAEVMQTPSKYATYRWYGEPSRQVRELLMKQLESDPNWK
1KBZ Chain:A ((50-180))
---VRKLRPDVIVNAAAHTAVDKAESEPELAQLLNATSVEAIAKAANETGAWVVHYSTDYVFPGTGDIPWQETDATSPLNVYGKTKLAGEK-ALQDNCPKHLIFRTSWVYAGKGNNFAKTMLRLAKERQTLSVIN---------------------------------
General information:
TITO was launched using:
RESULT:
Template:
1KBZ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -1564 for 635 contacts (-2.5/contact) +
2D Compatibility (PS) -11386 + (NN) 6611 + (LL) 2024
1D Compatibility (HY) -3600 + (ID) 1550
Total energy: -9465.0 ( -14.91 by residue)
QMean score : -0.033
(partial model without unconserved sides chains):
PDB file :
Tito_1KBZ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1KBZ-query.scw
PDB file :
Tito_Scwrl_1KBZ.pdb
: