Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSYSKIPAGKDLPNDIYVAIEIPANHAPIKYEIDKDTDCLFVDRFMATPMFYPANYGFIPNTLADDGDPLDVLVVTPYPVAPGSVIRARPVGVLHMTDEAGGDAKLIAVPHDKLSVLYKDVKEYTDLPALLLEQIKHFFENYKDLEKGKWVKVEGWGNADAARAEITKAVAAFQK
1JFD Chain:A ((1-171))
-SLLNVPAGKDLPEDIYVVIEIPANADPIKYEIDKESGALFVDRFMSTAMFYPCNYGYINHTLSLDGDPVDVLVPTPYPLQPGSVIRCRPVGVLKMTDEAGEDAKLVAVPHSKLSKEYDHIKDVNDLPELLKAQIAHFFEHYKDLEKGKWVKVEGWENAEAAKAEI---VASFER
General information:
TITO was launched using:
RESULT:
Template:
1JFD.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -95936 for 1343 contacts (-71.4/contact) +
2D Compatibility (PS) -18761 + (NN) -10493 + (LL) 468
1D Compatibility (HY) -20800 + (ID) 6150
Total energy: -151672.0 ( -112.94 by residue)
QMean score : 0.618
(partial model without unconserved sides chains):
PDB file :
Tito_1JFD.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1JFD-query.scw
PDB file :
Tito_Scwrl_1JFD.pdb
: