Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MIAAYQARCQARVDAALDALF--VAPREELQRLYEAMRYSVMNGGKRVRPLLAYAACEALGGAPQRADAAACAVELIHAYSLVHDDLPAMDDDDLRRGQPTTHRAFDEATAILAADGLQALAFEVLAD-TRRNPQEHAVCLEMLTRLARAAGSAGMVGGQAIDLGSVGVALDQAALEVMHRHKTGALIEASVRLGALASGRAEPASLAALERYAEAIGLAFQVQDDILDVESDTATLGKTQGKDQAHNKPTYPALLGLEAAKGYALELRDLALAALDGFPPSADPLRQLARYIVERRN
4F62 Chain:A ((8-292))
----FSTYTQSRVDQYLEQQLSDYAPANQL---HNAMRYSLF-GGKRIRPMLTYASAQLVGDISSLTDASAAALESIHAYSLIHDDLPAMDN-------PTCHIQFDEATAILAGDALQTFAFELLSNPTSAQPE---LAIKLIQELVVASGRNGMITGQMIDLSSENKNISLAELEQMHVHKTGALIKASVRMGALSTGQVKPEQLAKLDAYAHAIGLAFQVQDDIIDLT----------------NKATYPKLLGLDGAKALVVRLHEQAIAQISEFGDKSQPLTDLANYIID---
General information:
TITO was launched using:
RESULT:
Template:
4F62.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -147109 for 2180 contacts (-67.5/contact) +
2D Compatibility (PS) -29340 + (NN) -27397 + (LL) 2108
1D Compatibility (HY) -24400 + (ID) 6700
Total energy: -232838.0 ( -106.81 by residue)
QMean score : 0.566
(partial model without unconserved sides chains):
PDB file :
Tito_4F62.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4F62-query.scw
PDB file :
Tito_Scwrl_4F62.pdb
: