Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MTDNHIDVLINGCGIGGAMLAYLLGRQGHRVVVVEQAR-RERAINGA--DLLKPAGIRVVEAAGLLAEVTRRGGRVRHELEVYHDGELLRYFNYSSVDARGYFILMPC--------------ESLRRLVLEKIDGEATVEMLFETRIEAVQRDERHAIDQVRLNDGRVLRPRVVVGADGIASYVRRRLLDIDVERRPYPSPMLVGTFALAPCVAER-------------NRLYVDSQGGLAYFYPIGFDRARLVVSF--PREEARELMAD--TRGESLRRRLQRFVGDESAEAIAAVTGTSRFKGIPIGYLNLDRYWADN----VAMLGDAIHNVHPITGQGMNLAIEDASALADALDLALRDACALEDALAGYQAERFPVNQAIVSYGHALATSLEDRQRFAGVFDTALQGSSRTPEALGGERSYQPVRSPAPLG |
| 3V3N Chain:A ((8-348)) | ------NVAIIGGGPVGLTMAKLLQQNGIDVSVYERDNDREARIFGGTLDLHKGSGQEAMKKAGLL--------------QTYYDLALPMGVNIA--DKKGNILSTKNVKPENRFDNPEINRNDLRAILLNSLENDTVI---WDRKLVMLEPGKKKWT--LTFENKPSETADLVILANGGMSKVRKFVTDTEVEE--------TGTFNIQADIHQPEINCPGFFQLCNGNRLMASHQGNLLFANPNNNGALHFGISFKTPDEWK--TQVDFQNRNSVVDFLLKKF-SDWDERYKELIHATLSFVGLATRIFPLEKPWKSKRPLPITMIGDAAHLMPPFAGQGVNSGLVDALILSD--NLADGKFNSIEEAVKNYEQQMF--------------------------------------------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 3V3N.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -180105 for 2369 contacts (-76.0/contact) +
2D Compatibility (PS) -32011 + (NN) -8598 + (LL) 5624
1D Compatibility (HY) -11600 + (ID) 4300
Total energy: -230990.0 ( -97.51 by residue)
QMean score : 0.413
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