Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MANTPSAKKRAKQAEKRRSHNASLRSMVRTYIKNVVKAIDAKDLEKAQAAFTAAVPVIDRMADKGIIHKNKAARHKSRLSGHIKALSTAAA
4GKK Chain:T ((4-89))
-----SALKRHRQSLKRRLRNKAKKSAIKTLSKKAVQLAQEGKAEEALKIMRKAESLIDKAAKGSTLHKNAAARRKSRLMRKVRQLLEAAG
General information:
TITO was launched using:
RESULT:
Template:
4GKK.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -25939 for 552 contacts (-47.0/contact) +
2D Compatibility (PS) -9153 + (NN) -3566 + (LL) 184
1D Compatibility (HY) -400 + (ID) 1600
Total energy: -40474.0 ( -73.32 by residue)
QMean score : 0.717
(partial model without unconserved sides chains):
PDB file :
Tito_4GKK.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4GKK-query.scw
PDB file :
Tito_Scwrl_4GKK.pdb
: