Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTAVQLIVGLGNPGPEYDQTRHNAGALFVERLAHAQGVSLVADRKYFGLVGKFSHQGKDVRLLIPTTYMNRSGQSVAALAGFFRIAPDAILVAHDELDMPPGVAKLKTGGGHGGHNGLRDIIAQLGNQNSFHRLRLGIGHPGHSSLVSGYVLGRAPRSEQELLDTSIDFALGVLPEMLAGDWTRAMQKLHSQKA
4JC4 Chain:A ((1-194))
MTAVQLIVGLGNPGPEYDQTRHNAGALFVERLAHAQGVSLVADRKYFGLVGKFSHQGKDVRLLIPTTYMNRSGQSVAALAGFFRIAPDAILVAHDELDMPPGVAKLKTGGGHGGHNGLRDIIAQLGNQNSFHRLRLGIGHPGHSSLVSGYVLGRAPRSEQELLDTSIDFALGVLPEMLAGDWTRAMQKLHSQKA
General information:
TITO was launched using:
RESULT:
Template:
4JC4.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -123852 for 1675 contacts (-73.9/contact) +
2D Compatibility (PS) -20995 + (NN) -12227 + (LL) 0
1D Compatibility (HY) -24800 + (ID) 9700
Total energy: -191574.0 ( -114.37 by residue)
QMean score : 0.588
(partial model without unconserved sides chains):
PDB file :
Tito_4JC4.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4JC4-query.scw
PDB file :
Tito_Scwrl_4JC4.pdb
: