Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MIQRVYVALGSNLAEPREQIQAALDAFERLPETRLVAVSPLYISDPLGPADQPRFVNGVAALDTNLAPLDLLDALQAIELEQGRVRDL-RWGPRTLDLDILLFGEQLLDLPRLKVPHYHMQARAFVLYPLADLAPDLRLPDGRHLPELLAACPFEGIERLPGA
4M5J Chain:A ((8-161))
-----YIAIGSNLASPLEQVNAALKALGDIPESHILTVSSFYRTPPLGPQDQPDYLNAAVALETSLAPEELLNHTQRIELQQGRVR--ERWGPRTLDLDIMLFGNEVINTERLTVPHYDMKNRGFMLWPLFEIAPELVFPDGEMLRQILHTRAFDKLNK----
General information:
TITO was launched using:
RESULT:
Template:
4M5J.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -107239 for 1143 contacts (-93.8/contact) +
2D Compatibility (PS) -15841 + (NN) -8824 + (LL) 932
1D Compatibility (HY) -17200 + (ID) 3950
Total energy: -152122.0 ( -133.09 by residue)
QMean score : 0.641
(partial model without unconserved sides chains):
PDB file :
Tito_4M5J.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4M5J-query.scw
PDB file :
Tito_Scwrl_4M5J.pdb
: