Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MLIIPAIDLKDGACVRLRQGLMEDATVFSDDPVAMAAKWVDGGCRRLHLVDLNGAFEGKPVNGEVVTAIARRYPDLPIQIGGGIRSLETIEHYVRAGVSYVIIGTKAVKQPEFVGEACRAFPGKVIVGLDAKDGFVATDGWAEVSEVQVIDLARRFEADGVSAIVYTDISKDGMMQGCNVEATAALANATRIPVIASGGIHNLGDIQKLLDARTPGIIGAITGRAIYEGTLDVAEAQALCDNFKA
2VEP Chain:A ((6-235))
--LLPAVDVRDGQAVRLVHGESGTETSYGS-PLEAALAWQRSGAEWLHLVDLDAAF-GTGDNRALIAEVAQAM-DIKVELSGGIRDDDTLAAALATGCTRVNLGTAALETPEWVAKVIAEHGDKIAVGLDVRGTTLRGRGWTR-DGGDLYETLDRLNKEGCARYVVTDIAKDGTLQGPNLELLKNVCAATDRPVVASGGVSSLDDLRAIAGLVPAGVEGAIVGKALYAKAFTLEEA---------
General information:
TITO was launched using:
RESULT:
Template:
2VEP.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -174694 for 1980 contacts (-88.2/contact) +
2D Compatibility (PS) -25020 + (NN) -11864 + (LL) 1144
1D Compatibility (HY) -14800 + (ID) 3900
Total energy: -229134.0 ( -115.72 by residue)
QMean score : 0.659
(partial model without unconserved sides chains):
PDB file :
Tito_2VEP.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2VEP-query.scw
PDB file :
Tito_Scwrl_2VEP.pdb
: