Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MATAPRPLREQYLHFQPISTRWHDNDIYGHVNNVTYYAFFDTAVNTYLIERGGLDIQGGEVIGLVVSSSCDYFAPVAFPQRIEMGLRVARLGNSSVQYELALFLEGQREACAAGRFVHVFVERRSSRPVAIPQELRDALAALQSSAQ
2AV9 Chain:A ((5-146))
----PRPLREQYLHFQPISTRWHDNDIYGHVNNVTYYAFFDTAVNTYLIERGGLDIQGGEVIGLVVSSSCDYFAPVAFPQRIEMGLRVARLGNSSVQYELALFLEGQREACAAGRFVHVFVERRSSRPVAIPQELRDALAALQSSA-
General information:
TITO was launched using:
RESULT:
Template:
2AV9.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -103081 for 1066 contacts (-96.7/contact) +
2D Compatibility (PS) -15232 + (NN) -4614 + (LL) 668
1D Compatibility (HY) -20800 + (ID) 7100
Total energy: -150159.0 ( -140.86 by residue)
QMean score : 0.434
(partial model without unconserved sides chains):
PDB file :
Tito_2AV9.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2AV9-query.scw
PDB file :
Tito_Scwrl_2AV9.pdb
: