Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNKLLVSLLLTLGLTGLAHAAGDAAAGQAKAAVCGACHGADG-NSPAPNFPKLAGQGERYLLKQMHDIKDGKRT----VLEMTGLLTNLSDQDLADIAAYFASQK---MSVGMADPNLVAQGEALFRGGKIAEGMPACTGCHSPSGVGIATAGFPHLGGQHATYVAKQLTDFREGTRTNDGDTKIMQSIAAKLSNKDIAAISSYIQGLH
1H1O Chain:A ((12-183))
-----------------------------VSSDCMVCHGMTGRDTLYPIVPRLAGQHKSYMEAQLKAYKDHSRADQNGEIYMWPVAQALDSAKITALADYFNAQKPPMQSSGIKHAG-AKEGKAIFNQGVTNEQIPACMECHGSDGQG--AGPFPRLAGQRYGYIIQQLTYFHNGTRVN----TLMNQIAKNITVAQMKDVAAYLSSL-
General information:
TITO was launched using:
RESULT:
Template:
1H1O.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -31482 for 1250 contacts (-25.2/contact) +
2D Compatibility (PS) -17975 + (NN) -10354 + (LL) 2572
1D Compatibility (HY) -11200 + (ID) 2800
Total energy: -71239.0 ( -56.99 by residue)
QMean score : 0.417
(partial model without unconserved sides chains):
PDB file :
Tito_1H1O.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1H1O-query.scw
PDB file :
Tito_Scwrl_1H1O.pdb
: