Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MRPLLFSALLLLSGHTQASEWNDSQAVDKLFGAAGVKGTFVLYDVQRQRYVGHDRERAETRFVPASTYKVANSLIGLSTGAVRSADEVLPYGGKPQRFKAWEHDMSLRDAIKASNVPVYQELARRIGLERMRANVSRLGYGNAEIGQVVDNFWLVGPLKISAMEQTRFLLRLAQGELPFPAPVQSTVRAMTLLESGPGWELHGKTGWCFDCTPELGWWVGWVKRNE-RLYGFALNIDMPGGEADIGKRVELGKASLKALGILP
4ZDX Chain:A ((34-274))
-------------------SDEKAEKIKNLFNEVHTTGVLVIQQGQTQQSYGNDLARASTEYVPASTF-MLNALIGLEHHKATTT-EVFKWDGQKRLFPEWEKDMTLGDAMKASAIPVYQDLARRIGLELMSKEVKRVGYGNADIGTQVDNFWLVGPLKITPQQEAQFAYKLANKTLPFSPKVQDEVQSMLFIEEKNGNKIYAKSGWGWDVDPQVGWLTGWVVQPQGNIVAFSLNLEMKKGIPS-SVRKEITYKSLEQLGIL-
General information:
TITO was launched using:
RESULT:
Template:
4ZDX.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -115475 for 2002 contacts (-57.7/contact) +
2D Compatibility (PS) -25733 + (NN) -11180 + (LL) 1656
1D Compatibility (HY) -22800 + (ID) 5200
Total energy: -178732.0 ( -89.28 by residue)
QMean score : 0.543
(partial model without unconserved sides chains):
PDB file :
Tito_4ZDX.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4ZDX-query.scw
PDB file :
Tito_Scwrl_4ZDX.pdb
: