Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | --MPSASAMIIFNLSSYNPGPFILVGIPGLEQFHVWIGIPFCIIYIVAVVGNC-ILLYLIVVEHSLHEPMFFFLSMLAMTDLILSTAGVPKALSIF----WLGAREITFPGCLTQMFFLHY-------NFVLDSAILMAMAFDHYVAICSPLRYTTILTPKTIIKSAMGISFRSFCIILPDVFLLTCLPFCRTRIIPHTYCEHIGVAQLACADI---------SINFW--------YGFCVPIMTVISDVILIAV-------SYAHILCAVFGLPSQ--DACQKALGTCGSHVCVIL----MFYTPAFFSILA----HRFGHNVSRTFHIMFANLYIVIPPALNPMVYGVKTKQIRDKVILLFSKGTG------------------------------------- |
4CVH Chain:A ((1-411)) | SMHPQAVAAVLP----AGPTPK---------QFCPILERPLISYTLQALERVCWIKDIVVAVTGENMEVMKSIIQKYQHKRISLVEAGVTRHRSIFNGLKALAEDQINSKLSKPEVVIIHDAVRPFVEEGVLLKVVTAAKEHGAAGAIRPLVSTVVSPSADGCLDYSLE-RARHRASEMPQAFLFDVIYEAYQQCSDYDLEFGTECLQLALKYCCTKAKLVEGSPDLWKVTYKRDLYAAESIIKERISQEICVVMDTEEDNKHVGHLLEEVLKSELNHVKVTSEALDQCYNFVCVNVTTSDFQETQKLLSMLEESSLCILYPVVVVSVHFLDFKLVPPSQKMENLMQIREFAKEVKERNILLYGLLISYPQDDQKLQESLRQGAIIIASLIKERNSGLIGQLLIA |
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General information:
TITO was launched using:
| RESULT:
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Template: 4CVH.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -364757 for 2199 contacts (-165.9/contact) +
2D Compatibility (PS) -32133 + (NN) -1346 + (LL) 816
1D Compatibility (HY) -8400 + (ID) 3200
Total energy: -409020.0 ( -186.00 by residue)
QMean score : 0.069
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