Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MAILEVKQLTKIYGTKKMAQEVLRDINMSIEEGEFIAIMGPSGSGKTTLLNVLSSIDYISQGSITLKGKKLEKLSNKELSDIRKHDIGFIFQEYNLLHTLTVKENIMLPLTVQKLDKEHMLNRYEKVAEALNILDISDKYPSELSGGQRQRTSAARAFITLPSIIFADEPTGALDSKSTQDLLKRLTRMNEAFKSTIIMVTHDPVAA-SYANRVVMLKDGQIFTELYQGDDDKHTFFKEIIRVQSVLGGVNYDL
1OXU Chain:B ((1-219))
MVRIIVKNVSKVFKKGKVV--ALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFD-DRLVASNGKLIVPPEDRKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRVEEVAKILDIHHVLNHFPRELSGGQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHDPADIFAIADRVGVLVKGKL--------------------------------
General information:
TITO was launched using:
RESULT:
Template:
1OXU.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -126987 for 1769 contacts (-71.8/contact) +
2D Compatibility (PS) -23649 + (NN) -6847 + (LL) 2040
1D Compatibility (HY) -18400 + (ID) 3800
Total energy: -177643.0 ( -100.42 by residue)
QMean score : 0.478
(partial model without unconserved sides chains):
PDB file :
Tito_1OXU.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1OXU-query.scw
PDB file :
Tito_Scwrl_1OXU.pdb
: