Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | ----------MIKKNKVFLGVLLVLVVILGGGVLFYQSQFQKTTNQALAIAYKDAKVAKKDVIHQKIDKEFENFRGSYEIEFNTKSAE----YSYHVDAKTGQILERDMDNNGFSKSTSQSSSSSSQKSHKIS-QEEAKKIAFKDANIEESEVSNLKIKEEIENGKSVYDIDFVDLKNKNEVDYQIDAETGKIIERSRDHMND----- |
4Q58 Chain:D ((2-195)) | LGAPQNPNAKAAGSRKIHFNWLPP-----SGKPMGYRVKYWIQGDSESEAHLLDSKVPSVELTNLYP-------YCDYEMKVCAYGAQGEGPYSSLVSCRTHQEVPSEPGRLAFNVVSSTVTQLSWAEPAETNGEITAYEVCYGLVNDDNRPIGPMKKVLVDNPKNRMLLIE--NLRESQPYRYTVKARNGAGWGPEREAIINLATQP |
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General information:
TITO was launched using:
| RESULT:
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Template: 4Q58.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) 64774 for 1168 contacts (55.5/contact) +
2D Compatibility (PS) -17295 + (NN) 9044 + (LL) 1644
1D Compatibility (HY) -4400 + (ID) 1350
Total energy: 52417.0 ( 44.88 by residue)
QMean score : 0.052
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