Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MKKRASGVLMHIT-SLPGDLGIGTFGREAYAFVDFLVETDQKFWQILPLTTTSFGDSPYQSFSAVAGNTHLIDFDLLTLEGFISKDDYQNISFGQDPEVVDYAGLFEKRRPVLEK--AVKNFLQEERATRMLSDFLQEEKWVTDFAEFMAIKEHFGNKALQEWDDKAIIRREEEALAGYRQKLSEVIKYHEVTQYFFYK--QWFELKEYANDKGIQIIGDMPIYVSADSVEVWTMPELFKLDRDKQPLAIAGVPADDFSDDGQLWGNPIYNWDYHKESDFDWWIYRIQSGVKMYDYLRIDHFKGFSDYWEIRGDYQTANDGSWQPA-PGPELFATIKEKLGDLPIIAENLGYIDERAERLLAGTGFPGMKIMEFGFYDTTGNSIDIPHNYTENTIAYAGTHDNEVINGWFENLTVEQKAYAENYMRRLPNEPITETVLRTLYATVSQTTITCMQDLLDKPADSRMNMPNTVGGNWQWRMRKEDLTENRKAFLKEITTIYNRGNK |
| 2F2A Chain:B ((4-411)) | --ETVIGLEVHVELKTDSKMFSPSPAHFGAEPNSNTNVIDLAYPGVLPVVNKRAVDWAMRAAMAL--NMEIATESKFDRKNYFYPDNPKAYQISQFDQPIGENGYIDIEVDGETKRIGITRLHMEEDAGKSTHK---GEYSLVDLNR--------QGTPLIEIVSEPDIRSPKEAYA-YLEKLRSIIQYTGVSDVKMEEGSLRCDANISLRPYGQEKFGTKAELKNLNSFNYVRKGLEYEEKRQEEEL-----------LNGGEIGQETRRFDEST-----------GKTILMRVK-------------EGSDDYRYFPEPDIVPLYIDDAWKERVRQTIPEL---------PDERKAKYVNELGLPAYDAHVLTLTKEMSDFFESTIE--------HGADVKLTSNWLMGGVNEYLNKNQVE----LLDTKLTPENLAGMIKLIEDGTMS------SKIAKKVFPELAAKGGNAKQIMEDNGLVQ------------------ |
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General information:
TITO was launched using:
| RESULT:
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Template: 2F2A.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) 16175 for 3164 contacts (5.1/contact) +
2D Compatibility (PS) -40880 + (NN) 4271 + (LL) 7208
1D Compatibility (HY) -4400 + (ID) 3100
Total energy: -20726.0 ( -6.55 by residue)
QMean score : 0.156
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