Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MADVKVVNNEDSRGQKQDLKAKLFHIKIGSVPLPVYVCLALLILLAGFLQKLPVNMLGGFAVILTMGWFLGTIGASIPGFKNFGGPAILSLLVPSILVFFNLINKNVLESTNMLMKQANFLYFYIACLV-SGSILGMNRKMLIQGLLRMIFPMLLGMVCAMMVGTFVGVILGLEWRHTLFYIVTPVLAGGIGEGILPLSLGYSSITGVASEQLVAQLIPATIIGNFFAILCTALLNRLGEKKPHLSGQGQLVRLNKGEDMSDIIADHSGPIDVKKMGGGVLTACSLFIFGHLLQQLTGFPGPVLMIVAAAILKYINVIPRETQNGAKQLYKFISGNFTFPLMAGLGLLYIPLKDVVATLSIQYFIVVISVVFTVISVGFFVSRFLNMNPVEAGIISACQSGMGGTGDVAILSTADRMNLMPFAQVATRLG------GAITVITMTAILRMLF |
| 2C1L Chain:A ((1-358)) | MNFFSLHPNVYATGRPKGLIGMLENVWVSNHTPGE----------------------------------------------------------GTLYLISGFSNYNGGVRFYETFTEHINQGGRVIAILGGSTSQRLSSRQVVEELLNR--------------GVEVHIINRKRILHAKLYGTSN--NLGESLVVSSGNFTGPGMSQNIEASLLLDNNTTQSMGFSWNDMISEMLNQNWHIHNMT---------NATDASPGWNLLYDERTTNLTLDETERVTLIVTLGHADTARIQAAPGT----TAGQGTQYFWLS-KDSYDFFPPLTIRNRRGTKATYSSLINMNYIDINYTDTQCRVTFE------AENNFDFRLGTGKLRYTGVAKSNDIAAITRVGDSDYELRIIKQGTPEHSQLDPYAVSFIGNRGKRFGYISNEEFGRIIGVTF |
|
General information:
TITO was launched using:
| RESULT:
|
Template: 2C1L.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
|
3D Compatibility (PKB) -254304 for 2933 contacts (-86.7/contact) +
2D Compatibility (PS) -37131 + (NN) -7690 + (LL) 8612
1D Compatibility (HY) 3600 + (ID) 1750
Total energy: -288663.0 ( -98.42 by residue)
QMean score : 0.133
|
|
|