Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MLGQPTRAQLAALVDHTLLKPETTRADVAALVAEAAEL--GVYAVCVSPSMVPVAVQA--G----GVRVAAVTGFPSGKHVSSVKAHEAAAALASGASEIDMVIDIGAALCGDIDAVRSDIEAVRAAAA-GAVLKVIVESAVLLGQSNAHTLVDACRAAEDAGADFVKTSTGCHPAGGATVRAVELMAETVG---PRLGVKASGGIRTAADAVAMLNA------------GATRLGLSGT-RAVLDGLS
5C5Y Chain:A ((7-245))
-----VAQRALSLMDLTSLTNTETDQEIIDLCRQAKSPAGETAAICIFPRFIPVAKKALKAQQTPHIKIATVTNFPQGNDDLDIALAETRAAVAYGADEVDLVFPYRALIQGNETIGFDMVKVCKQACSGNAKLKVIIETGELKS---EELIRKASEIAINAGADFIKTSTGKVA-INATPEAAKVMLTVIKNKNTAVGFKPAGGVRNADDAAIYLDLADNILGNEWADANHFRFGASSLLISLLDTL-
General information:
TITO was launched using:
RESULT:
Template:
5C5Y.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -141819 for 1916 contacts (-74.0/contact) +
2D Compatibility (PS) -24282 + (NN) -13527 + (LL) 320
1D Compatibility (HY) -10400 + (ID) 3500
Total energy: -193208.0 ( -100.84 by residue)
QMean score : 0.562
(partial model without unconserved sides chains):
PDB file :
Tito_5C5Y.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-5C5Y-query.scw
PDB file :
Tito_Scwrl_5C5Y.pdb
: