Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MGVNANISESLTGTIEAPFPEFEAPPANPMEVLRNWLERARRYGVREPRALALATVDGQ-GRPSTRIVVIAELGERGVVFAT-HADSQKGRELAQNPWASGVLYWRESSQQIILNGRAERLPDERADAQWLSRPYQTHPMSIASRQSETLADIHALRAEARRLAE---TDGPLPRPPGYCLFELCLESVEFWGNGTERLHERLRYDR-DEGGWKHRYLQP
1DNL Chain:A ((1-199))
-----------------GGLRRRDLPADPLTLFERWLSQACEAKLADPTAMVVATVDE-HGQPYQRIVLLKHYDEKGMVFYTNL-GSRKAHQIENNPRVSLLFPWHTLERQVMVIGKAERLSTLEVMKYFHSRPRDSQIGAWVSKQSSRISARGILESKFLELKQKFQ-QGEVPLPSFWGGFRVSLEQIEFWQGGEHRLHDRFLYQRE-NDAWKIDRLAP
General information:
TITO was launched using:
RESULT:
Template:
1DNL.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -63257 for 1344 contacts (-47.1/contact) +
2D Compatibility (PS) -21374 + (NN) -13681 + (LL) 1264
1D Compatibility (HY) -12000 + (ID) 3100
Total energy: -112148.0 ( -83.44 by residue)
QMean score : 0.511
(partial model without unconserved sides chains):
PDB file :
Tito_1DNL.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1DNL-query.scw
PDB file :
Tito_Scwrl_1DNL.pdb
: