Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MFSLKALLPLALLLVSANQVAAKVHKAKIYKHELSDEMKEVTFEQHLAHLGQKYLTQFEKANPEVVFSREHPFFTEGGHDVPLTNYLNAQYYTDITLGTPPQNFKVILDTGSSNLWVPSN--ECGSL-------ACFLHSKYDHEASSSYKANGTEFAIQYGTGS-LEGYISQDTLSIGDLTIPKQDFAEATSEPGLTFAFGKFDGILGLGYDTISVDKVVP-PFYNAIQQDLLDEKRFAFYLGDTSKDTENGGEATFGGIDESKFKGDITWLPVRRKAYWEVKFEGIGLGDEYAELESHGAAIDTGTSLITLPSGLAEMINAEIGAKKGW----TGQYTLDCNTRDNLPDLIFNFN-GYNFTIGPYDYTLEVSGSCISAITPMDFPEPVGPLAIVGDAFLRKYYSIYDLGNNAVGLAKAI |
| 3PVK Chain:A ((3-331)) | ------------------------------------------------------------------------------VPVTLHNE-QVTYAADITVGSNNQKLNVIVDTGSSDLWVPDVNVDCQVTYSDQTADFCKQKGTYDPSGSSASQDLNTPFKIGYGDGSSSQGTLYKDTVGFGGVSIKNQVLADVDSTSI-------DQGILGVGYKTNEAGGSYDNVPVTLKKQGVIAKNAYSLYLNSPD---AATGQIIFGGVDNAKYSGSLIALPVTSDRELRISLGSVEVSGKTINTDNVDVLLDSGTTITYLQQDLADQIIKAFNGKLTQDSNGNSFYEVDCNL---SGDVVFNFSKNAKISVPASEFAAS---KCQLLFDVND-------ANILGDNFLRSAYIVYDLDDNEISLAQVK |
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General information:
TITO was launched using:
| RESULT:
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Template: 3PVK.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -167471 for 2560 contacts (-65.4/contact) +
2D Compatibility (PS) -32413 + (NN) -9521 + (LL) 7368
1D Compatibility (HY) -18000 + (ID) 4600
Total energy: -224637.0 ( -87.75 by residue)
QMean score : 0.480
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